structural bioinformatics
ABOUT THE BOOK ABOUT THE AUTHOR TABLE OF CONTENTS ORDERING EXTRA MATERIAL ERRATA HOME

Extra Material

The book contains 12 pages with color plates for various figures. Because not all of the color figures are included in these pages, we are including some extra color figures here. (Click on underlined title to view enlargements.)

Chapter 2 - Introduction to Macromolecular Structure

TFig2_5 Cysteine bridge.jpg - 21821 Bytes TFig2_6 Snake venom protein.jpg - 25217 Bytes TFig2_7 L_aa.jpg - 14557 Bytes TFig2_9 Helix atoms and HBs.jpg - 16674 Bytes TFig2_11 Helix ribbon HBs and side chains.jpg - 19076 Bytes
Fig. 2.5 Fig. 2.6 Fig. 2.7 Fig 2.9 Fig. 2.11
TFig2_12 atoms and HBs in parallel beta strands.jpg - 21469 Bytes TFig2_14 Pleated structure.jpg - 18103 Bytes TFig2_17 atoms and HBs in anti-parallel beta strands.jpg - 23855 Bytes TFig2_18 Ribbons anti-parallel with side chains.jpg - 18915 Bytes TFig2_19 loop structure of 1ANS.jpg - 18186 Bytes
Fig. 2.12 Fig. 2.14 Fig. 2.17 Fig. 2.18 Fig 2.19
TFig2_40 Exercise3.jpg - 29045 Bytes
Fig. 2.40


Chapter 7 - Protein Geometry
TFig7_1 Bond angle.jpg - 22239 Bytes TFig7_5 Sign of the dihedral angle.jpg - 14720 Bytes TFig7_6 Positive and negative dihedral angles.jpg - 16036 Bytes TFig7_10 Rama Proline.jpg - 18649 Bytes TFig7_11 Pre-proline.jpg - 17980 Bytes
Fig. 7.1 Fig. 7.5 Fig. 7.6 Fig 7.10 Fig. 7.11


Page 63 - More Proteins

T_1tsp Beta2 Solenoid.jpg T_2bbk Beta7 propeller.jpg T_2dnj AlphaBeta 4 Layer Sandwich.jpg T_2POR Beta Barrel.jpg
1TSP 2BBK 2DNJ 2POR


Protein Gallery

T1BL8 Potassium Channel.jpg - 20433 Bytes T1lts enterotoxin B subunit.jpg - 18033 Bytes T2pol E coli poymerase.jpg - 17787 Bytes T1av1 4-helix Closed Bundle.jpg - 18745 Bytes T1gtp GTP cyclohydrolase 1.jpg - 18395 Bytes
1BL8 1LTS 2POL 1AV1 1GTP
T1f52 Glutamine Synthase Chains ABCDEF.jpg - 16107 Bytes T1f52 Glutamine Synthase Chains GHIJKL.jpg - 18735 Bytes T1f52 Glutamine Synthase All Chains.jpg - 18551 Bytes T1f52 Glutamine Synthase All Chains Tilted.jpg - 17422 Bytes
1F52 1F52 1F52 1F52


All the molecular graphics were generated using UCSF Chimera: http://www.cgl.ucsf.edu/chimera

The primary reference for this molecular modeling system is:
E. F. PETTERSEN, T. D. GODDARD, C. C. HUANG, G. S. COUCH, D. M. GREENBLATT, E. C. MENG, AND T. E. FERRIN. UCSF Chimera – A visualization system for exploratory research and analysis. J. Comput. Chem., 25 (2004), 1605-1612.

Copyright© F. J. Burkowski, 2008 All rights reserved.